PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g08600.6
Common NameLR48_Vigan07g106300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 104aa    MW: 11747.8 Da    PI: 9.3447
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g08600.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.42.5e-291848100
          DUF260   8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                     lrr+C+++C++apyfp ++ +kfa+vhk+FG +n++k+l+         +++slvyeA+ar+r+PvyG+vg+i++l+ q+++l+++la++++e
  Vang01g08600.6   1 LRRRCSQNCIFAPYFPPNDLHKFAMVHKVFGCKNLTKMLD---------IVKSLVYEANARVRNPVYGCVGLISNLEIQVSELQTQLAVAQAE 84 
                     69************************************95.........69**************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031953.5E-28182IPR004883Lateral organ boundaries, LOB
PROSITE profilePS5089116.143185IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
LRRRCSQNCI FAPYFPPNDL HKFAMVHKVF GCKNLTKMLD IVKSLVYEAN ARVRNPVYGC  60
VGLISNLEIQ VSELQTQLAV AQAEILTMKM QQEFTFNNGR ISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3018618112LOB family transfactor Ramosa2.1
5ly0_B1e-3018618112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g08600.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-105AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428642.13e-69PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW31e-43LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0L9UXT47e-68A0A0L9UXT4_PHAAN; Uncharacterized protein
STRINGXP_007142160.15e-51(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.16e-46LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]