PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 461aa    MW: 50535.8 Da    PI: 8.3219
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.84.9e-1089114126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C +++rtG C yG++C+++H+
  Vang01g06790.1  89 PGEPDCLYYLRTGMCGYGSNCRYHHP 114
                     5789*********************8 PP

2zf-CCCH37.73.4e-12132157227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C +f++tGtCkyG++Ck++H++
  Vang01g06790.1 132 GQPDCEYFLKTGTCKYGSTCKYHHPK 157
                     5799********************96 PP

3zf-CCCH382.8e-12180202527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG Ck+G  CkF+H++
  Vang01g06790.1 180 SCPYYMRTGSCKFGVACKFHHPQ 202
                     6********************97 PP

4zf-CCCH39.96.9e-13314339227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tGtCkyG+ CkF+H++
  Vang01g06790.1 314 DQPECRYFMSTGTCKYGSDCKFHHPK 339
                     689*********************96 PP

5zf-CCCH31.92.3e-10357381226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++ +G Ck+G++CkF H+
  Vang01g06790.1 357 GQAVCSYYRIYGMCKFGPTCKFDHP 381
                     7899********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.98688116IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-588115IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-790114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-593115IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788130158IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-10132157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5136157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6174203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.638175203IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4177202IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-10179202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4180203IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.624312340IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-11314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-7316341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6318339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5353381IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6355382IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544355383IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-7357381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
LRVLCADFFL KAQKGSSGFD RTTKKSLLLS FQRYQMPENR QVLRNADSTP SGDNIEGGAD  60
FSEAIRRLKI NDNWDRDAAA QSTQYPDRPG EPDCLYYLRT GMCGYGSNCR YHHPAHISIG  120
SHYGEELPQR TGQPDCEYFL KTGTCKYGST CKYHHPKDRR GAAPVSFNTL GLPMRQEEKS  180
CPYYMRTGSC KFGVACKFHH PQHASIGAYP LAGSPTSTII PTSGLPYAGG FPAWSAVPRM  240
SYLSGQGVQS YVPPFLSSSQ GIIPVQSWNN YMGSMNPTMP TGYLGSNLVY DFMNLGESLF  300
GGQAINSALP NRPDQPECRY FMSTGTCKYG SDCKFHHPKE RVSQSLINPL GLPVRPGQAV  360
CSYYRIYGMC KFGPTCKFDH PVLTIPQNYG LTSPALALDA PLISNQRGLS SVQPPETSPS  420
KLSSDNKLQH SDAKAATEDS SKQADTTPNS FPASSEPLHD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976690.0BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017430908.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A4D6MIZ30.0A0A4D6MIZ3_VIGUN; Serine/threonine-protein kinase/endoribonuclease IRE1
STRINGXP_007141660.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-118C3H family protein