PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06560.1
Common NameLR48_Vigan07g056800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 335aa    MW: 37408.1 Da    PI: 4.6581
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06560.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1778128155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+GVr++  +g+Wv eIr+p   + r  r +lg+f ta+eAa a+++a+++++g
  Vang01g06560.1  78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFPTAQEAALAYDEAARAMYG 128
                     56*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-3278137No hitNo description
PfamPF008471.2E-1278128IPR001471AP2/ERF domain
SMARTSM003806.9E-3579142IPR001471AP2/ERF domain
PROSITE profilePS5103221.93179136IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2179137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3179137IPR001471AP2/ERF domain
PRINTSPR003672.5E-108091IPR001471AP2/ERF domain
PRINTSPR003672.5E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGAYDQVSVR PLDSSRKRKS RSRGDGSRSV AETIAKWKEY NEHLYSGKDD GRSTRKAPAK  60
GSKKGCMKGK GGPQNYECNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFP TAQEAALAYD  120
EAARAMYGPC ARLNFPHISD YASANRNDCH KAYEHASPTS RMKLEPKDEA VDRLDPGAGE  180
GIHHVEQAED VNEDQMDFSW IDALDFNNDD YSKSFSNDEL FQVDELLGLI DNNPVDDSAL  240
MQCLDFGQTG FPGDSNPQLD NTSSSFVYQL QNPDAKLLGS LPHMEQTPSG FDYGLDFLKP  300
VVPEDYNGVG EEPQFLNLDD VLNHDSKDML ESKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429189.10.0PREDICTED: dehydration-responsive element-binding protein 2C
RefseqXP_017429190.10.0PREDICTED: dehydration-responsive element-binding protein 2C
TrEMBLA0A0L9UWE70.0A0A0L9UWE7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKJ40.0A0A0S3RKJ4_PHAAN; Uncharacterized protein
STRINGXP_007141729.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-38ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]