PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g06090.1
Common NameLR48_Vigan07g069200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 219aa    MW: 24102.9 Da    PI: 5.4583
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g06090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.52.2e-387105198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC++dCv+apyf  +q +++fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lqqq+ +l++e+
  Vang01g06090.1   7 SCGACKFLRRKCTSDCVFAPYFSYDQaSSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEEI 101
                     6***********************9978******************************************************************9 PP

          DUF260  95 allk 98 
                     ++l+
  Vang01g06090.1 102 DALG 105
                     8875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.5266108IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-367104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQASSHFAAV HKIYGASNVS KLLSHLPIQN  60
RRDAAITISY EALARMHDPI YGCVAHIYAL QQQVVNLQEE IDALGSMVAN STVSVVNCGT  120
VQAPMYSDNG IPYDTLQHDA TRTQYFQNNL ANFLSEDGNA RALQSLESQM NIELPNAHVE  180
EPSYGDSNSN PLEQFLSGID QEVFVNHPWF KHNADIKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3631037106LOB family transfactor Ramosa2.1
5ly0_B7e-3631037106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g06090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428552.11e-165PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS85e-56LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0L9UW621e-163A0A0L9UW62_PHAAN; Uncharacterized protein
STRINGXP_007141403.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-58LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]