PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g05050.1
Common NameLR48_Vigan07g058400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 182aa    MW: 20275.1 Da    PI: 7.7199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g05050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39111101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdP+yG++g i  lq+++ +l+++la
  Vang01g05050.1  11 SCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPIYGCIGAIALLQRKMVELQHDLA 105
                     6*********************************************************************************************9 PP

          DUF260  96 llkee 100
                      +k++
  Vang01g05050.1 106 IAKDR 110
                     99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.3410111IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-3911108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKGYEPRSSS SCAACKFLKR RCIPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVP  60
EEQREDTVNS LAYEAEARLR DPIYGCIGAI ALLQRKMVEL QHDLAIAKDR LARYAAAATT  120
PSAAIATSNN SFNSHVSLPP FPEFFSCNDF SDNFCHNSSS QSPPLTRHEM VDDFIQIPYI  180
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-4761156115LOB family transfactor Ramosa2.1
5ly0_B7e-4761156115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g05050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429806.11e-132PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL85e-62LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0L9UVJ51e-131A0A0L9UVJ5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RKG01e-131A0A0S3RKG0_PHAAN; Uncharacterized protein
STRINGXP_007141747.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-60LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]