PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g03420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 198aa    MW: 22653.9 Da    PI: 9.3583
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g03420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114971123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  Vang01g03420.1 49 YSCTFCKREFRSAQALGGHMNIH 71
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.69E-74676No hitNo description
Gene3DG3DSA:3.30.160.603.7E-54774IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1364976IPR007087Zinc finger, C2H2
SMARTSM003550.00724971IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-64972IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
LMFVRREQKM KSQSQHEKPA IIGDDRKNNW EERAFAEDAV GSMWPPRPYS CTFCKREFRS  60
AQALGGHMNI HRRDRARLKQ NLNPHYQNYH RIKSLLGNNN HPFSSPLIST QINCGLECGN  120
FVETSLSMGM TTMFGQNSSP NISCKRLKNN ISSLPIFLRP CSKDKGLPFQ PVEISVELHH  180
AMEDLDLELR LGKQQVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124471229superman protein
2l1o_A2e-124471229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g03420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428551.11e-113PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0L9UVX11e-111A0A0L9UVX1_PHAAN; Uncharacterized protein
STRINGXP_007141854.13e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10