PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02950.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 443aa    MW: 50615.9 Da    PI: 9.0373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02950.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-057897221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cg +F+ + +L +H++
  Vang01g02950.3 78 TCEECGVTFKKHAYLLQHMQ 97
                    6******************7 PP

2zf-C2H218.17.6e-06160184123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ +H
  Vang01g02950.3 160 FVCTvdDCHASYRRKDHLTRHLLLH 184
                     89********************998 PP

3zf-C2H213.30.00025189214123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  Fs + n++rH    H
  Vang01g02950.3 189 FKCPvvNCNIEFSLQGNMQRHVEEiH 214
                     89*******************98777 PP

4zf-C2H217.51.1e-05229253123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk F+  s+Lk+H  +H
  Vang01g02950.3 229 HVCPeiGCGKGFRFASQLKKHEDSH 253
                     79*******************9888 PP

5zf-C2H213.90.00016347372123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+   C+ +Fs ksnL +H +  H
  Vang01g02950.3 347 FQCEfkGCSCTFSKKSNLDKHKKAvH 372
                     89*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355283356IPR015880Zinc finger, C2H2-like
SMARTSM00355267797IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-9157186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-6158186No hitNo description
PROSITE profilePS5015710.221160189IPR007087Zinc finger, C2H2
SMARTSM003550.012160184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-4187215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.42E-5187215No hitNo description
PROSITE profilePS5015710.159189219IPR007087Zinc finger, C2H2
SMARTSM003550.0054189214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-6223253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.034229253IPR007087Zinc finger, C2H2
SMARTSM003550.016229253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231253IPR007087Zinc finger, C2H2
SMARTSM003550.92288313IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4289313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280290313IPR007087Zinc finger, C2H2
SMARTSM0035535316337IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-7328369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.52E-9331386No hitNo description
PROSITE profilePS5015713.609347377IPR007087Zinc finger, C2H2
SMARTSM003550.0098347372IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280349372IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-5371401IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7378404IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280380404IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED  60
EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQNSK IIGKLWINSV KHWIPDNELQ  120
NARGNEFRLD GSVSGRETSC EAPSRMPQSR SLNLRLARPF VCTVDDCHAS YRRKDHLTRH  180
LLLHEGKTFK CPVVNCNIEF SLQGNMQRHV EEIHDGSSTA AADKSHKQHV CPEIGCGKGF  240
RFASQLKKHE DSHGRLFFLG FIYELVNPVG YNFEESLYHA VKLESIEVVC LEPGCMKHFA  300
NVQGLRAHVN TSHQYMTCDI CGSKQLKKNI KRHLRSHEAD SSSSKTFQCE FKGCSCTFSK  360
KSNLDKHKKA VHLKEKPFRC GFPDCGMRFA YKHVRDNHEK TAKHVFTLVS SFSFWVILKK  420
LMQNSGQGRG EGGRENVLLL KC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02950.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429048.10.0PREDICTED: transcription factor IIIA
TrEMBLA0A0L9UUX00.0A0A0L9UUX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL20.0A0A0S3RJL2_PHAAN; Uncharacterized protein
STRINGXP_007142319.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-93transcription factor IIIA