PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02950.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 404aa    MW: 46053.4 Da    PI: 8.8336
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02950.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057899223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ Cg +F+ + +L +H+++H
  Vang01g02950.2 78 TCEECGVTFKKHAYLLQHMQSH 99
                    6*******************99 PP

2zf-C2H218.26.8e-06148172123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ +H
  Vang01g02950.2 148 FVCTvdDCHASYRRKDHLTRHLLLH 172
                     89********************998 PP

3zf-C2H213.40.00023177202123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  Fs + n++rH    H
  Vang01g02950.2 177 FKCPvvNCNIEFSLQGNMQRHVEEiH 202
                     89*******************98777 PP

4zf-C2H217.79.9e-06217241123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk F+  s+Lk+H  +H
  Vang01g02950.2 217 HVCPeiGCGKGFRFASQLKKHEDSH 241
                     79*******************9888 PP

5zf-C2H2140.00015308333123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+   C+ +Fs ksnL +H +  H
  Vang01g02950.2 308 FQCEfkGCSCTFSKKSNLDKHKKAvH 333
                     89*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355283356IPR015880Zinc finger, C2H2-like
SMARTSM003550.0187799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.03277104IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-578100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SuperFamilySSF576675.07E-7142174No hitNo description
Gene3DG3DSA:3.30.160.601.8E-9145174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.012148172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221148177IPR007087Zinc finger, C2H2
PROSITE patternPS000280150172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-4175203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.32E-5175203No hitNo description
SMARTSM003550.0054177202IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159177207IPR007087Zinc finger, C2H2
PROSITE patternPS000280179202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-6211241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016217241IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.408217246IPR007087Zinc finger, C2H2
PROSITE patternPS000280219241IPR007087Zinc finger, C2H2
SMARTSM003550.92249274IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4250274IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251274IPR007087Zinc finger, C2H2
SMARTSM0035535277298IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-7289330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.32E-9292347No hitNo description
SMARTSM003550.0098308333IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.609308338IPR007087Zinc finger, C2H2
PROSITE patternPS000280310333IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-5332362IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7339365IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280341365IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED  60
EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQSHS PEHWIPDNEL QNARGNEFRL  120
DGSVSGRETS CEAPSRMPQS RSLNLRPFVC TVDDCHASYR RKDHLTRHLL LHEGKTFKCP  180
VVNCNIEFSL QGNMQRHVEE IHDGSSTAAA DKSHKQHVCP EIGCGKGFRF ASQLKKHEDS  240
HVKLESIEVV CLEPGCMKHF ANVQGLRAHV NTSHQYMTCD ICGSKQLKKN IKRHLRSHEA  300
DSSSSKTFQC EFKGCSCTFS KKSNLDKHKK AVHLKEKPFR CGFPDCGMRF AYKHVRDNHE  360
KTAKHVFTLV SSFSFWVILK KLMQNSGQGR GEGGRENVLL LKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A3e-1314636220183Aart
2i13_B3e-1314636220183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-160AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429048.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-108TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0L9UUX00.0A0A0L9UUX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL20.0A0A0S3RJL2_PHAAN; Uncharacterized protein
STRINGXP_007142319.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-110transcription factor IIIA