PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g02950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 416aa    MW: 47438.3 Da    PI: 9.2216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g02950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-057897221
                    EETTTTEEESSHHHHHHHHH CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                    +C+ Cg +F+ + +L +H++
  Vang01g02950.1 78 TCEECGVTFKKHAYLLQHMQ 97
                    6******************7 PP

2zf-C2H218.27.1e-06160184123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+  dC+ s++rk++L+rH+ +H
  Vang01g02950.1 160 FVCTvdDCHASYRRKDHLTRHLLLH 184
                     89********************998 PP

3zf-C2H213.40.00023189214123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     +kCp  +C+  Fs + n++rH    H
  Vang01g02950.1 189 FKCPvvNCNIEFSLQGNMQRHVEEiH 214
                     89*******************98777 PP

4zf-C2H217.71e-05229253123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp   Cgk F+  s+Lk+H  +H
  Vang01g02950.1 229 HVCPeiGCGKGFRFASQLKKHEDSH 253
                     79*******************9888 PP

5zf-C2H2140.00015320345123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+   C+ +Fs ksnL +H +  H
  Vang01g02950.1 320 FQCEfkGCSCTFSKKSNLDKHKKAvH 345
                     89*******************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355283356IPR015880Zinc finger, C2H2-like
SMARTSM00355267797IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-9157186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.49E-6158186No hitNo description
PROSITE profilePS5015710.221160189IPR007087Zinc finger, C2H2
SMARTSM003550.012160184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280162184IPR007087Zinc finger, C2H2
SuperFamilySSF576677.28E-5187215No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4187215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.159189219IPR007087Zinc finger, C2H2
SMARTSM003550.0054189214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-6223253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.408229258IPR007087Zinc finger, C2H2
SMARTSM003550.016229253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231253IPR007087Zinc finger, C2H2
SMARTSM003550.92261286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4262286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280263286IPR007087Zinc finger, C2H2
SMARTSM0035535289310IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-7301342IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-9304359No hitNo description
PROSITE profilePS5015713.609320350IPR007087Zinc finger, C2H2
SMARTSM003550.0098320345IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280322345IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-5344374IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.7351377IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280353377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
LHSSICSLYL ITKTMVEAVT IEERPKSRDI RRYFCQYCGI CRSKKTLITS HINSQHKEED  60
EKARKETDPE TESSKSNTCE ECGVTFKKHA YLLQHMQNSK IIGKLWINSV KHWIPDNELQ  120
NARGNEFRLD GSVSGRETSC EAPSRMPQSR SLNLRLARPF VCTVDDCHAS YRRKDHLTRH  180
LLLHEGKTFK CPVVNCNIEF SLQGNMQRHV EEIHDGSSTA AADKSHKQHV CPEIGCGKGF  240
RFASQLKKHE DSHVKLESIE VVCLEPGCMK HFANVQGLRA HVNTSHQYMT CDICGSKQLK  300
KNIKRHLRSH EADSSSSKTF QCEFKGCSCT FSKKSNLDKH KKAVHLKEKP FRCGFPDCGM  360
RFAYKHVRDN HEKTAKHVFT LVSSFSFWVI LKKLMQNSGQ GRGEGGRENV LLLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-1315837420183Aart
2i13_B2e-1315837420183Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g02950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-160AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017429048.10.0PREDICTED: transcription factor IIIA
TrEMBLA0A0L9UUX00.0A0A0L9UUX0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RJL20.0A0A0S3RJL2_PHAAN; Uncharacterized protein
STRINGXP_004498336.11e-149(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-100transcription factor IIIA