PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0184s00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 153aa    MW: 17682.6 Da    PI: 8.1578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0184s00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.7e-096989526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C+ ++r G C++Gd C FaHg
  Vang0184s00040.1 69 VCPEYRR-GGCNRGDACEFAHG 89
                      7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-56393IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-56490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.6626591IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-66891IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-76989IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLQKFLPSNN LDDSDEDDPY SADHFRMFEF KVRRCTRSRS HDWTDCPFAH PGEKARRRDP  60
RRYHYSGTVC PEYRRGGCNR GDACEFAHGV FECWLHPARY RTEACKDGKN CKRKTHTNVA  120
FCSNRFTGNN NNNVVGADSN VPDLAWVNEL LM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KRKTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0184s00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424051.12e-80PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9ZWA18e-63C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0L9ULF44e-79A0A0L9ULF4_PHAAN; Uncharacterized protein
STRINGXP_007149822.15e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-60C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]