PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0176s00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 297aa    MW: 33852.8 Da    PI: 9.8375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0176s00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015130152223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C ++++++ +L  H +  H
  Vang0176s00100.1 130 SCSVCFRVYPTSRLLSIHVSEvH 152
                       6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.28102127IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104127IPR007087Zinc finger, C2H2
SMARTSM003556.8129152IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131152IPR007087Zinc finger, C2H2
SMARTSM003557176201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTQKYGPHSE VSIQFKIESG KRIPCVIEVK SVKMAMEVEN NHNQQLGFPF WKPIRRKFGP  60
DSPFFAPGNL ERELLAKQVA LELTEEKEQL EKWMQEEEGR EIFCPIVGCG ARLTSMDDFE  120
NHYNARHTAS CSVCFRVYPT SRLLSIHVSE VHDSFFQAKV ARGYDMVFGY LLPSSYECLV  180
EKCGLKFKSY NRRHQHLVDK HKFPTSFEFF KKAKPSKKQR LKSQQKKAVP KEKDAGMMEV  240
ENATVDDLVS AVSKLSTSDS TPSNISFGRR SKGLSFVPRT VQRRDQSNPA ASGTKR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0176s00100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417077.10.0PREDICTED: zinc finger protein 511
TrEMBLA0A0S3RW220.0A0A0S3RW22_PHAAN; Uncharacterized protein
STRINGXP_007161722.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-99zinc ion binding;nucleic acid binding;zinc ion binding