PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0134s00140.1
Common NameLR48_Vigan641s006300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 232aa    MW: 25379.2 Da    PI: 6.887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0134s00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00115779123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C+++F++   L  H  +H
  Vang0134s00140.1 57 YECKTCNRCFPSFQALGGHRASH 79
                      99**********99999998887 PP

2zf-C2H214.20.00013136158123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  Fs+   L  H+r+H
  Vang0134s00140.1 136 HECSICGAEFSSGQALGGHMRRH 158
                       78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.68E-95679No hitNo description
PfamPF139126.3E-115680IPR007087Zinc finger, C2H2
SMARTSM003550.145779IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.2655779IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576676.68E-9131158No hitNo description
Gene3DG3DSA:3.30.160.607.3E-4134158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.2E-13135159IPR007087Zinc finger, C2H2
SMARTSM003550.01136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743136158IPR007087Zinc finger, C2H2
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTCSTADNS AAFEPPTTSN ELRNEEDEDL ANCLILLARG HSTPKPSHGK ESGLYVYECK  60
TCNRCFPSFQ ALGGHRASHK RFSKAGAEEK QVTTFGDNIS KNNHDDYCLT LQLSTVLYNS  120
SNSTRSSTVN AKSKVHECSI CGAEFSSGQA LGGHMRRHRN FLSSPSSGAI AYAGDRIPEI  180
PEIKKQKDVL NLDLNLPAPE DDHHRESNLL PFQSKEKVIV FSATSLVDCH Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0134s00140.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409990.11e-173PREDICTED: zinc finger protein ZAT5
SwissprotQ681X42e-49ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLA0A0L9TF821e-171A0A0L9TF82_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZ151e-171A0A0S3RZ15_PHAAN; Uncharacterized protein
STRINGXP_007162794.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description