PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0121s00340.1
Common NameLR48_Vigan03g255900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 263aa    MW: 29348 Da    PI: 8.8569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0121s00340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00016385123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H+++H
  Vang0121s00340.1 63 YSCNFCKREFRSAQALGGHMNVH 85
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.96E-66089No hitNo description
PROSITE profilePS5015711.2196390IPR007087Zinc finger, C2H2
PfamPF139127.2E-66386IPR007087Zinc finger, C2H2
SMARTSM003550.00726385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
LPLINMEDSQ YLLWFKRKQI LNSHIQQPFG ARITNTNSSW EERAFAEDAA RILGGCIWPP  60
RSYSCNFCKR EFRSAQALGG HMNVHRRDRA RLKQSLGHPN ESLQHLHKND CSAAASKASS  120
SRPSTISTQE NCYHQPTMSP YSPSFSWGHH HMGSSDSEPK GSAVNGREQF LKGSGCNDYV  180
ETSLSVGQSS VFGQKLPIES YGDEAISYKR SKTSMPPLPV FHKPCSSDRH LTFHSAEFVL  240
GLKPGMEDLD LELRLGKPQK VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-125885229superman protein
2l1o_A1e-125885229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0121s00340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416776.10.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0L9U9A60.0A0A0L9U9A6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZJ30.0A0A0S3RZJ3_PHAAN; Uncharacterized protein
STRINGXP_007163443.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]