PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0112s00180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 336aa    MW: 36739.7 Da    PI: 9.9646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0112s00180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.3e-12124166754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Vang0112s00180.1 124 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 166
                       79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-17120184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9123166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-12124170No hitNo description
Gene3DG3DSA:4.10.280.104.4E-16124179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.38E-6237278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MMSRMNTVGW MEEREDDNNS ASWPRNKPTN TIIVTDTTPT TKPTTASSAA AFTATATAFA  60
GFHSLEDGSS KPLFHQRSKI LRPLDGRVDE GSAKNGGNSS NANSSVTGLD QKGKKKGMPA  120
KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI EYLKELLQRI NDLHNELEST  180
PPGSSLTPSS NFHPLTPTPP TLPSRIKEEL CPSSLPSPNA QPARVEVRLR EGRAVNIHMF  240
CARKPGLLLS TMRAMDNLGL DIQQAVISCF NGFAMDIFRA EATEPSLSAM QRRSGCPSGA  300
DQSSSLGFSW LQWHDVTSFG MKQTSDCHFS VNLAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113131KKKGMPAKNLMAERRRRKK
2125132ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899280.0HM989928.1 Glycine max ICEd mRNA, complete cds.
GenBankFJ3932260.0FJ393226.1 Glycine max inducer of CBF expression 4 (ICE4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014522347.11e-127PREDICTED: transcription factor SCREAM2-like
SwissprotQ9LSE21e-100ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0L9UEB11e-127A0A0L9UEB1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RF391e-127A0A0S3RF39_PHAAN; Uncharacterized protein
STRINGPOPTR_0012s10780.11e-116(Populus trichocarpa)
STRINGPOPTR_0015s11650.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-86bHLH family protein