PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0084s00540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 255aa    MW: 28884.4 Da    PI: 6.595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0084s00540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12118143126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       y   +C+++ +tG+C yGd+CkF+H+
  Vang0084s00540.1 118 YQPDICKDYKETGYCGYGDSCKFMHD 143
                       67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-9116148IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878117145IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12118148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.1E-13182236IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139205.9E-9194236No hitNo description
SuperFamilySSF578504.35E-13194237No hitNo description
SMARTSM001841.7E-4195232IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.453195233IPR001841Zinc finger, RING-type
CDDcd001622.06E-7195236No hitNo description
PROSITE patternPS005180210219IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
SVSAEPSEES GKPVFQFESS KEIQVQHDSK ATATLETETE FSKDARAIRE RAXKQASESL  60
KGKSXRPEDE KLYKGMNSYK DYKAGFRREQ TIASEKAGGA HGPLRASAHI RVSARFDYQP  120
DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQLEKEWEEA EKARKMRLAA GEXADEEEGA  180
NLNDEDDEDS LPFACFICRN PFADPVVTKC KHYFCEHCAL KHHAKNKKCF VCNQPTLGIF  240
NVAHEIRRKM AEDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6728250113317RING finger protein 113A
5z58_M2e-6728250113317RING finger protein 113A
6ff4_t2e-6728250113317RING finger protein 113A
6ff7_t2e-6728250113317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0084s00540.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
GenBankAP0153210.0AP015321.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0277, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410638.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410639.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410640.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410641.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
RefseqXP_017410642.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-135C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
SwissprotQ9FNG61e-134C3H51_ARATH; Zinc finger CCCH domain-containing protein 51
TrEMBLA0A0S3SXT70.0A0A0S3SXT7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SY180.0A0A0S3SY18_PHAAN; Uncharacterized protein
TrEMBLA0A0S3TE130.0A0A0S3TE13_PHAAN; Uncharacterized protein
STRINGXP_007134882.11e-179(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-127C3H family protein