PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0071ss00910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 400aa    MW: 45662.1 Da    PI: 8.6295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0071ss00910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.81.7e-07372392526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         Cr+++r G C +Gd+CkF H+
  Vang0071ss00910.1 372 VCRHYSR-GRCYFGDKCKFLHD 392
                        6******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291367394IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-4368393IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6369392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-7371394IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-5372392IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
METKDSPMEL YEISTESDGS DSDSDWEDSG EDPDYDALEE SHSKFSNLSL KHKAKARFIE  60
EKGRGEEVLV VTASVNDGEN FGKVQKLIEG DACTGDVVLF EQNVYEMFNI ASRSASGPPC  120
GKRIVAGRIV KESYGAAKQQ HTFTIEVLWS KGEKPLPPLY PLLIKGRNLY RLKTLRQKWE  180
DEAERQKILM EKHSRGSLAR ADREERIQEK EKRKHTKENR VSKKEARNQR QSNSHITRPQ  240
YQPQGTNVVI NPENPEFPSR NSVLSVNMMK ERYCILNNSA ATFGGTSFAV HSMHRNHTSD  300
FRNTFDIGRV RGAETGANYY ADPHFRENLP RFVNCHPNMA EMGTHHRIPL ANANHSHPFM  360
APNRESFKIN QVCRHYSRGR CYFGDKCKFL HDLRDKGNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0071ss00910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441704.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1
RefseqXP_017441705.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X2
TrEMBLA0A0S3SZ330.0A0A0S3SZ33_PHAAN; Uncharacterized protein
STRINGGLYMA16G01296.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224