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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0070s00490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | SBP | ||||||||
Protein Properties | Length: 546aa MW: 61383.8 Da PI: 7.4615 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134 | 4.7e-42 | 243 | 319 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q Vang0070s00490.1 243 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 319 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.0E-34 | 238 | 305 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.795 | 241 | 318 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.89E-40 | 242 | 323 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.1E-32 | 244 | 317 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
LSGYFKIPFF WCLVPKKLFR IEPRNSEKAN SFSSTCVSTK LVLHFFLPAD SPLFHSICDF 60 DLIVLMESWS YVPEEKGYLF SDEMDFSLDA FMRSRRTLVE WDNKSNFERD GFNSDREAVK 120 SMEFVDLGFP DLLQKSFHGS QPLETSSYEL NSNSSRRGNS STQVIALDST MGEEESDSKH 180 LSSLVEAKTH DSSLIDLKLG RLADCKGASS DKVAKEGFTL TSINPTTLSK RARTSSLSAQ 240 APVCQVYGCN MDLSSSKDYH KRHKVCDAHS KTAKVIVNGL EQRFCQQCSR FHLLAEFDDG 300 KRSCRRRLAG HNERRRKPQF DYMTGKQHKI LHSYQGTKYL GSSLQNKPQF PFQNIFQSGI 360 LFHGKHAQNS QSGRIKLEED SLYSSQLAAP VTLGQELSSC ALSLLSDQSQ YPSRHAAGNP 420 LAGSRILHGI HIQDRDDLVS QTSLRITSSA DKYAANESFP CNTASKDVIK NQTAPFSNAV 480 HALQDHHGDD ICQPSDLFDI KHRLSSEHGA TVDLFQLSSH LQRVEQQRNS VLVKWENEDY 540 CFPTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 235 | 317 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0070s00490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427905.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_017427906.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_017427907.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_017427908.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A0L9USY1 | 0.0 | A0A0L9USY1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T224 | 0.0 | A0A0S3T224_PHAAN; Uncharacterized protein | ||||
STRING | XP_007153485.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-64 | SBP family protein |