PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0070s00120.1
Common NameLR48_Vigan06g110400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 211aa    MW: 23001.5 Da    PI: 8.7029
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0070s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.13.2e-2941081100
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C++lr++C++dCv++p++      ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P  G+vg+++++++  +
  Vang0070s00120.1   4 SCNGCRILRKGCTEDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQQHRTDVFKSLMYEACGRIINPTFGSVGLFWSGEWAQC 96 
                       6*********************9998777889************************************************************* PP

            DUF260  89 qlkaelallkee 100
                       q++++++l++++
  Vang0070s00120.1  97 QAAVDAVLAGSQ 108
                       *****9999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4453109IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MKISCNGCRI LRKGCTEDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQQ  60
HRTDVFKSLM YEACGRIINP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMPTSHSQSD  120
HGSKLLDIRH VSKDANMDKV RGKSKKHKDV MMPMSHVGLV NSATLWNPIL SHEPRRLEGG  180
NGEIMKAVLV SQDKPRINGG ANIDLELTLG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0070s00120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017426331.11e-157PREDICTED: LOB domain-containing protein 41-like
TrEMBLA0A0L9USS11e-155A0A0L9USS1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T2B11e-155A0A0S3T2B1_PHAAN; Uncharacterized protein
STRINGXP_007153445.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-64LOB domain-containing protein 41
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]