PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0069ss00470.1
Common NameLR48_Vigan406s006000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 260aa    MW: 28921.2 Da    PI: 8.0902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0069ss00470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002103125123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C + F ++  L  H++ H
  Vang0069ss00470.1 103 FSCNYCQRKFYSSQALGGHQNAH 125
                        89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-6100130No hitNo description
PROSITE profilePS5015711.427103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDLQRQEPCP SESLNMITFS DTMPCQRSSI DTQRKRNHTE SDDQKHPNDS NPRVLLDLSL  60
SNKDSGDDDE SKPELNLLNC FHTNFSENSS ESSQGNELDP RVFSCNYCQR KFYSSQALGG  120
HQNAHKRERT LARRGYKAGA ADFGHTYSTM PFLPSHGLYN KSLGIQVHAM INKPSHQAPI  180
FGLCRSNGWQ RQPLDSQPAI GNFRVGAESE SSLADSVPKV GKFSTRVVTE GFGGHCFGSF  240
AHLKSKQEKL QKLDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0069ss00470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017407462.10.0PREDICTED: zinc finger protein 3-like
TrEMBLA0A0L9T9G10.0A0A0L9T9G1_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T1140.0A0A0S3T114_PHAAN; Uncharacterized protein
STRINGXP_007135804.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-38C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]