PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0065s00550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 305aa    MW: 34830.8 Da    PI: 6.8672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0065s00550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-1795148356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ eq+++Le+ Fe  +++   ++ +LA+ lgL+ rq+ +WFqNrRa++k
  Vang0065s00550.1  95 KKRRLNMEQVKTLEKSFELGNKLEPXRKMQLARALGLQPRQIAIWFQNRRARWK 148
                       456899***********************************************9 PP

2HD-ZIP_I/II131.72.9e-4294184191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       ekkrrl+ eqvk+LE+sFe  +kLep rK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L++++++L++e+
  Vang0065s00550.1  94 EKKRRLNMEQVKTLEKSFELGNKLEPXRKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDSLQTQNQKLQAEV 184
                       69**************************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-1986152IPR009057Homeodomain-like
PROSITE profilePS5007117.18490150IPR001356Homeobox domain
SMARTSM003895.3E-1893154IPR001356Homeobox domain
CDDcd000862.46E-1595151No hitNo description
PfamPF000465.2E-1595148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-1997157IPR009057Homeodomain-like
PRINTSPR000311.2E-5121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5130146IPR000047Helix-turn-helix motif
PfamPF021831.4E-14150184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
LFSLLQKYCQ RMWPKTCNEM AFFPANFMLQ TPHHDDHQPP PSLTSILPAC TPQEYHGGVT  60
FLGKRSMSFS SGIEHXEEAN AEEDLSDDGS QAGEKKRRLN MEQVKTLEKS FELGNKLEPX  120
RKMQLARALG LQPRQIAIWF QNRRARWKTK QLEKDYDLLK RQYEAVKSDN DSLQTQNQKL  180
QAEVIFVVQI LALKSREPTE SINLNKETEG SCSNRSENSS DIKLDISRTP AIDSPLSTHQ  240
PSRTLFPSSA RPAGVAQLFQ TSSRPDLPCQ KIDQMVKEES LSNMFCAMDD QSGFWPWLEQ  300
QHFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0065s00550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410067.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like isoform X1
SwissprotQ8LC031e-117ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A0S3T2A00.0A0A0S3T2A0_PHAAN; Uncharacterized protein
STRINGXP_007157668.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127133106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-115HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]