PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0062ss00500.1
Common NameLR48_Vigan252s006900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 683aa    MW: 75977.8 Da    PI: 5.2859
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0062ss00500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.4e-0695116527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C ff++ G C  GdrC F+Hgp
  Vang0062ss00500.1  95 PCFFFQK-GLCLKGDRCAFMHGP 116
                        6777777.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.7792854IPR000571Zinc finger, CCCH-type
SMARTSM003560.00593053IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.00990117IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-690116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.32E-691115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-495116IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MLFAYLKEQA LVIKNGNECE YRHSEYARVN PRDCRYWLSG NCLNPKCSFR HPPLDGLLGT  60
QAATAGGPSV SAPPSQIPTA SATHASYNST KQAVPCFFFQ KGLCLKGDRC AFMHGPPAPS  120
TGNKVAAQVS VTSQGAENPG FKKPFGTNEK YTQERKTSQG SVAKSGGGPE PKPAPKIESA  180
PKRNMFELEK EMLPPSVGFD NEASRFKTSS PPVTNGPTVV RSSRLHQARV PDDHNFHSGK  240
DNDEFLRESS PGFDVLVADE LRNSDYYHGE DEFGKARGPD ERNLDSLNEY DLGHSGEYGL  300
AADIDRERFR VPQSYESYDH TQEPYLWEQH RKASAHLDRR TRRRSGSPEN AEVSDLRHHL  360
SKRRKVNGLK SVVSHDYALE GHGEEQSHRS FSRKDSLQLP LNESSLGNRF RGRIKLPANG  420
GADQLERDDR GRIRGRLLPG RLQATQQGRI HDRMRGRLQD DERRNSKDGL MGRELIGGDR  480
SDFAGPKSLA ELKNGRNPEN REPQPLGKRG TLRDDHPQSE DDLQFDGPKP LSEILKEKKR  540
GGPGGRADAD SGNGKSSNIK SEEVTNGSDP TQVTNTQNGV LSEIKEYVNN QNNEESKVEV  600
TDAVGGETGA TDGQYEEGMY EEAGEDQYYE GDDQREGDYE YEQGDEGYYE YEQGEEGENQ  660
EEEYMDEEDG DDFAKKIGVI HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0062ss00500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406450.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0L9T6Z70.0A0A0L9T6Z7_PHAAN; Uncharacterized protein
STRINGXP_007158839.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]