PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00040.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 174aa    MW: 18952.4 Da    PI: 7.2769
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00040.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-053155123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       +kC+ C k F+ k++L  H++t  H
  Vang0058ss00040.2 31 HKCSACYKQFKKKEHLIEHMKTsnH 55
                       79*******************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.0093160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.0E-43152IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
LRHTNIALHA FDLPFDMEAK ADSTQNPTPR HKCSACYKQF KKKEHLIEHM KTSNHSVHQP  60
ACGVCQKHCK SFESLREHLT GPLPKGVCSK TFSQRGCQLC LVLFDSPGSL IAHRETCCLS  120
APTRLGTKEL TYIDSHFECQ DSSDENHAGR GPGGTVAIDC EMVGGGSDGS LEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970201e-142BT097020.1 Soybean clone JCVI-FLGm-21B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423227.11e-111PREDICTED: RNA exonuclease 4-like
TrEMBLA0A1S3U5D81e-105A0A1S3U5D8_VIGRR; apoptosis-enhancing nuclease isoform X1
STRINGXP_007150536.11e-93(Phaseolus vulgaris)