PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0058ss00040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 336aa    MW: 37766.9 Da    PI: 7.151
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0058ss00040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-053155123
                       EEETTTTEEESSHHHHHHHHHH..T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                       +kC+ C k F+ k++L  H++t  H
  Vang0058ss00040.1 31 HKCSACYKQFKKKEHLIEHMKTsnH 55
                       79*******************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.0093160IPR007087Zinc finger, C2H2
PROSITE patternPS0002803355IPR007087Zinc finger, C2H2
SMARTSM004790.0032154280IPR013520Exonuclease, RNase T/DNA polymerase III
SuperFamilySSF530982.28E-11156274IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.107.8E-9181247IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.106.4E-4248282IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
LRHTNIALHA FDLPFDMEAK ADSTQNPTPR HKCSACYKQF KKKEHLIEHM KTSNHSVHQP  60
ACGVCQKHCK SFESLREHLT GPLPKGVCSK TFSQRGCQLC LVLFDSPGSL IAHRETCCLS  120
APTRLGTKEL TYIDSHFECQ DSSDENHAGR GPGGTVAIDC EMVGGGSDGS LELCARRGEM  180
IYDITGLTEE HLRNAMPLNE VKEKVCKILY NGENLGKIRL NGGKARLLVG HDLAHDLYCL  240
NMHYPDHMLS YDIQSGTHDP YEDCVSVMRL YKRIRAQMHP EEEDHGTSTP SNRIVGVHDC  300
WRSKELDNRT PDQLYAMSRS DYKCWCLDLR PKLPT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0058ss00040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0970201e-144BT097020.1 Soybean clone JCVI-FLGm-21B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423227.10.0PREDICTED: RNA exonuclease 4-like
TrEMBLA0A1S3U5D80.0A0A1S3U5D8_VIGRR; apoptosis-enhancing nuclease isoform X1
STRINGXP_007150536.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF257434