PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01450.1
Common NameLR48_Vigan102s007900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 400aa    MW: 46081.2 Da    PI: 8.8643
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012142165123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        y+C  Cg+ F +++ L++H +  H
  Vang0057ss01450.1 142 YRCRVCGRKFHTNDKLVNHFKQlH 165
                        9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.6E-761145IPR029060PIN domain-like
SuperFamilySSF576671.81E-6138168No hitNo description
PROSITE profilePS5015711.843142170IPR007087Zinc finger, C2H2
SMARTSM003550.0068142165IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-4146166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
CDDcd061674.16E-13159283No hitNo description
PfamPF019365.9E-7214294IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.6E-7227282IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MVTFKSYLTY RRTDNPFKVS RFRSICFFTL EATCWHIYGG LRYYHSGSEW GKNQKLNPNE  60
KPNRVGLFWD LDNKPPNAIP PFDVANKLRI AASSFGIVRY MVAYANSHTF SHVPQSVREK  120
RKERELLYRL ENKGVIKPNE PYRCRVCGRK FHTNDKLVNH FKQLHEREHG KRINQIESAR  180
GNRRVKLVAK YSMKMEKYKK AASAILTPKV GYGLADELKR AGFWVQTVLD KPQAADRALQ  240
SHIVDVMDHR RVECVVLVSD DSDFVDVIKE ARLRCLKTVV VGDIDDGVLK RTADTAFSWE  300
EILMGKAKKQ AASVVKNWKD RDILKRLEWT YNPDADKNKL DVDVDDIVAE TSEDDNIEDT  360
SDEVDDVYKD DRGSWWELDS DNDVSEGQSG KLSDLSVHK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss01450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017405477.10.0PREDICTED: uncharacterized protein LOC108318993
TrEMBLA0A0L9T4Z60.0A0A0L9T4Z6_PHAAN; Uncharacterized protein
STRINGXP_007163793.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]