PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss01020.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-X1
Protein Properties Length: 876aa    MW: 96863.8 Da    PI: 8.3423
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss01020.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.59e-06242260119
           zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                        CG H C + CH+G CppC+
  Vang0057ss01020.2 242 CGVHHCTEVCHRGACPPCR 260
                        ******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.32E-572150No hitNo description
PROSITE patternPS01359078144IPR019786Zinc finger, PHD-type, conserved site
CDDcd060082.00E-6178226No hitNo description
SMARTSM004380.072190208IPR000967Zinc finger, NF-X1-type
CDDcd060087.88E-10232280No hitNo description
SMARTSM004386.5E-4242261IPR000967Zinc finger, NF-X1-type
CDDcd060081.28E-9285332No hitNo description
SMARTSM004389.1E-4295314IPR000967Zinc finger, NF-X1-type
CDDcd060083.80E-8339383No hitNo description
SMARTSM004380.16349369IPR000967Zinc finger, NF-X1-type
SMARTSM00438170498513IPR000967Zinc finger, NF-X1-type
SMARTSM00438160521566IPR000967Zinc finger, NF-X1-type
SMARTSM004381.7603630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016640658IPR000967Zinc finger, NF-X1-type
SMARTSM0043861703725IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MTSAWTLPHS HPSPPPPTVL SDSDSDADGL SSGTEAHRHS DLSDSIFKPY LEFSGHSGAD  60
LSKIQSFLTS SSAGALSCLI CLERIKPSDP TWSCSSLCFA VFHLICIQSW ARQASDLAAA  120
RAATRLPIST ATASDTALWN CPKCRSEYPK SLIPKMYLCF CGKVENPPND PWVLPHSCGE  180
VCGRPLKHNC GHHCLLLCHP GPCPSCPKLV KVRCFCGCIE DVRRCGFKEF SCNNPCSKVL  240
DCGVHHCTEV CHRGACPPCR TRGVYACQCG KVKEEKECCD RVFQCDHPCE KRLSCGKHVC  300
ERGCHSGECG ECPLKGKRTC PCGKRIYEGM PCDASVQLCG ATCDKMLPCG YHRCPERCHR  360
GQCVETCRVV VKKSCRCGSL KKESRFLAIK IWHVKGSARG CVTVVGMLAS GAAVMGIALP  420
AQRYAEGGFD VRTINALLHA IVCSCRGPCA PCPIMVTISC ACGETRFEVP CGTEMDQKPP  480
RCPKPCPVSP LCRHASNCKP HKCHYGACHP CRLPCAKEYQ CSHTCKLRCH GPKPPPKPEF  540
TLKPKKKKII QQSEGVPGTP CPPCPELVWR SCVGQHIGAD RMMVCSDKSQ FSCENLCGNP  600
LPCGNHYCTK TCHALDSQLR GSEPCEDCYL RCQKEREPAC PHNCPRSCHP GDCPPCKVLI  660
KRSCHCGAMV HVFECIYYNS LSAKDQETVR SCGGPCHRKL PNCTHLCPET CHPGECTNAE  720
KCCKKVTVRC KCQTLKKEWV CQDVQAAYHL MGCHPRDTPK NQFGIGLIPC NSDCKSKVQV  780
VESELQLRKS RVTEVQDQDA EKSVRKRRKR RERVLESKET SKLQKIISGA KRFLLFVFIL  840
IILVAATYYC YKGLLRLSDW MNEVDEQRQR YSRIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1804810RKRRKRR
2804811RKRRKRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496252.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0S3S0T00.0A0A0S3S0T0_PHAAN; Uncharacterized protein
STRINGGLYMA18G03080.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors