PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss00970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 176aa    MW: 19671.5 Da    PI: 7.4174
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss00970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.4e-39111101100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+l+r+C+++C++apyf +++ kkfa vhk+FGasnv+k+l +++ee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l++
  Vang0057ss00970.1  11 SCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQH 102
                        6******************************************************************************************* PP

             DUF260  93 elallkee 100
                        +la +k++
  Vang0057ss00970.1 103 DLAIAKDR 110
                        **999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.13310111IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-3811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKGYEPRSSS SCAACKLLKR RCVPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVS  60
EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCHAAATV  120
LPSPDILHAH VSLPPFPDFC TSSNDFNDIF CHSSSSQLFS RHETVDDFNQ IPYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4361136113LOB family transfactor Ramosa2.1
5ly0_B3e-4361136113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss00970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163564.11e-127hypothetical protein PHAVU_001G244700g
RefseqXP_027915717.11e-127LOB domain-containing protein 21-like
SwissprotQ9SRL83e-61LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0S3S0U11e-126A0A0S3S0U1_PHAAN; Uncharacterized protein
STRINGXP_007163564.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-63LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]