PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss00300.1
Common NameLR48_Vigan03g305500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 280aa    MW: 31008.7 Da    PI: 5.0308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss00300.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20103153256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ kl+ge
  Vang0057ss00300.1 103 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 153
                        59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-35102162No hitNo description
SuperFamilySSF541715.36E-23103161IPR016177DNA-binding domain
SMARTSM003808.0E-40103166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-33103161IPR001471AP2/ERF domain
PROSITE profilePS5103223.472103160IPR001471AP2/ERF domain
PRINTSPR003673.1E-11104115IPR001471AP2/ERF domain
PfamPF008472.7E-14104153IPR001471AP2/ERF domain
PRINTSPR003673.1E-11126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDIYNNSSIV LSDFLDPCND QELMKALEPF MKTDSSITYP SLSSPNFSSN YDQKPSIKLN  60
QLTPSQTFQI QAQIQVTRAQ FLSPKPVPMK QVGGRVLSKP TKLYRGVRQR HWGKWVAEIR  120
LPKNRTRLWL GTFETAEEAA LAYDNAAFKL RGENARVNFP HLRHHGPSVY GELGTYKPLP  180
SAVDAKLEAI CKSLAMTTPK EETATTSEFE DVKVGIQTTS SPLSDEYSSS SSSAGSSSPE  240
SDITFLDFSD SYEAMDNLGL DLEKYPSVEI DWAALSESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23102160160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss00300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417409.10.0PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotO656651e-75ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A0L9UA920.0A0A0L9UA92_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S1170.0A0A0S3S117_PHAAN; Uncharacterized protein
STRINGXP_007163638.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-62ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]