PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0057ss00140.1
Common NameLR48_Vigan03g306800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 356aa    MW: 39526.2 Da    PI: 5.9003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0057ss00140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07152173223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C++Cgk F+r  nL+ H+r H
  Vang0057ss00140.1 152 FCEICGKGFRRDANLRMHMRAH 173
                        6*******************99 PP

2zf-C2H2110.0014236259123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C+ C+ k+Fs  s+Lk+H + +
  Vang0057ss00140.1 236 YSCTRCNkKHFSVLSDLKSHVKHC 259
                        99******************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.29E-6148174No hitNo description
SMARTSM003550.0017151173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905151178IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-6153175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SMARTSM0035527198231IPR015880Zinc finger, C2H2-like
SMARTSM0035525236258IPR015880Zinc finger, C2H2-like
SMARTSM00355290260288IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPNSNSNPNA DPTLNFNTQD PNVTANPQLP LQNLSQVRAR IDSLQHFLSQ SISTSTPLTT  60
DQIAMVSTHI ISSIHQIIVN GAALVTYSQH STAAVTPDAS SYPKPEHSAT DKHKQLLDSK  120
LEPPEDGDGV EDDDCEIVEL DAVELLAEHI HFCEICGKGF RRDANLRMHM RAHGDQFKTP  180
EALARPSETG SAKGAMRFSC PFEGCNRNKL HQRFRPLKSA LCLKNHFKRS HCPKMYSCTR  240
CNKKHFSVLS DLKSHVKHCG ECRWKCTCGT RFSRKDKLFS HIALFEGHAP ALACDEEDKG  300
KQVAEGDDEN PMLTTDSGFE LDNCFGDEEL PEGFFDDFGS IDDYSLEEVL GFLSN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0057ss00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418585.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I63e-72STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0L9UAF70.0A0A0L9UAF7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S0Z40.0A0A0S3S0Z4_PHAAN; Uncharacterized protein
STRINGXP_007163652.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-72C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]