PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0051s00380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 176aa    MW: 19952.3 Da    PI: 7.7698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0051s00380.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.000152951123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ Fs+   L  H++ H
  Vang0051s00380.1 29 FSCSFCKRGFSNAQALGGHMNIH 51
                      89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-42753IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.47E-62755No hitNo description
PROSITE profilePS5015711.1982956IPR007087Zinc finger, C2H2
PROSITE patternPS0002803151IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEFNTPIYKK SEIRWSSDDQ GGPGQVKSFS CSFCKRGFSN AQALGGHMNI HRRDRAKLKQ  60
SSEESLLSLD ISIKTSSDHR NDPSDLEEKI FFRLGSGEDQ KHARNRKMPF NFPHKSDHDY  120
ASERAMFIGS AEIPHHLPSF VLGQRIEEKT ADLDLELRLG LHPQETATLS TRSFF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15159RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0051s00380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418244.11e-124PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A0S3RV881e-126A0A0S3RV88_PHAAN; Uncharacterized protein
STRINGXP_007140495.11e-107(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-16C2H2 family protein