PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0051s00370.1
Common NameLR48_Vigan03g143700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 307aa    MW: 34365.2 Da    PI: 7.4795
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0051s00370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000125678123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ F++   L  H+++H
  Vang0051s00370.1 56 YSCTFCTREFRSAQALGGHMNVH 78
                      99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.48E-65382No hitNo description
SMARTSM003550.00975678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1365683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEEGQCLIRS KRKYSLSSSL HGSSTDYPSC DDHSWEEQAF AKDAAWSGCV WPPRSYSCTF  60
CTREFRSAQA LGGHMNVHRR DRARLKQPHS PQNEILNYDL EKTQAQNSVQ ISFTSLGYLY  120
PPSISGLAHN TNPNSDPYSH VVASPSKVLC TPVNKRCREK PQIPQYNSSS IFKGCHESSP  180
SLSSKSWPNL TDDFRFCSSR LDLEASVEKK LQGFDSGCRS EGDKGKTEVG VSMNLFMSRA  240
HPVVQSENKE TDTSFKKRKS EASSIPFFPK SCSVDKDHVQ SETFDFSPSS IEELDLELRL  300
GHRSEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-125178229superman protein
2l1o_A5e-125178229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0051s00370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418151.10.0PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A0L9U5K20.0A0A0L9U5K2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVL60.0A0A0S3RVL6_PHAAN; Uncharacterized protein
STRINGXP_007140494.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.15e-23C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]