PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 288aa    MW: 32155.4 Da    PI: 6.5965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.4e-203282256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+t eeAa a+++a+ kl+ge
  Vang0045ss01540.1 32 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTGEEAALAYDNAAFKLRGE 82
                       59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.85E-333191No hitNo description
PROSITE profilePS5103222.9193289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-313290IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-233290IPR016177DNA-binding domain
SMARTSM003805.9E-383295IPR001471AP2/ERF domain
PfamPF008477.7E-153382IPR001471AP2/ERF domain
PRINTSPR003678.5E-113344IPR001471AP2/ERF domain
PRINTSPR003678.5E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MVYSTQRENR TQLGPKRVLM KHGGAAAKAT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG  60
TFDTGEEAAL AYDNAAFKLR GEFARLNFPH LRHQGAFVFG EFGDYKPLPS SVDSKLQAIC  120
ESLAKQEQQK TCCSVEDVKP EVHTAAELAR VESDVVQSNV CPEFDNFKVE NGNDNPMLSS  180
PVSGESSSPE SGVTFLDFSD FAHSNYEWDE MESFGLEKYP SGYVWVSLAA SAMEFLTFAD  240
VLRKHGLQIF GSEIREGGRV HGLHGLPVFF VTCMTMGPFY SCLCSML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-213189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss01540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422443.11e-153PREDICTED: ethylene-responsive transcription factor ERF060
SwissprotQ8H1E41e-60RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0L9TKK31e-151A0A0L9TKK3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYG41e-151A0A0S3QYG4_PHAAN; Uncharacterized protein
STRINGXP_007159638.11e-123(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-62related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]