PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0045ss01430.1
Common NameLR48_Vigan01g027700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 320aa    MW: 35744.3 Da    PI: 7.3869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0045ss01430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2224.3e-07121142223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C+ Cgk F+r  nL+ H+r H
  Vang0045ss01430.1 121 FCEVCGKGFTRDANLRMHMRAH 142
                        6*******************99 PP

2zf-C2H213.20.00026206228223
                        EETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCg.ksFsrksnLkrHirtH 23 
                        +C+ C  ksF   s+Lk+H++ +
  Vang0045ss01430.1 206 SCERCRkKSFAVLSDLKSHMKQC 228
                        7*******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-6118145No hitNo description
SMARTSM003550.0018120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.508120147IPR007087Zinc finger, C2H2
PfamPF128747.1E-4121140No hitNo description
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-7122145IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035529167200IPR015880Zinc finger, C2H2-like
SMARTSM00355160205226IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-5219253IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MPNTTQQFPI NNINFNNDSL HVSLRNLSQL STRMDSLQSF VSQSIQSHTL LTHHQMNIVS  60
NEILTAIRHV ITNGAALVAA SEDVLSLSET PTSEYSPNPN TNQTNVVELD AMELLAQHLH  120
FCEVCGKGFT RDANLRMHMR AHGDEFKTAD ALASRARGET RGKTTRFSCP FEGCNRNKTH  180
KKFRPLKSVF CLRNHFKRSH CPKTLSCERC RKKSFAVLSD LKSHMKQCRG EATWKCSCGT  240
TFSRKDKLFG HVALFEGHLP MLEEEKAVEG LVKESDGGLD GLPEGFFDGL DEFGFGSTES  300
TSSPEETSPW GFPQMETHF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0045ss01430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414287.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ943I62e-68STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A0L9TJC40.0A0A0L9TJC4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3QYN50.0A0A0S3QYN5_PHAAN; Uncharacterized protein
STRINGXP_007159664.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-69C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]