PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0039ss01240.1
Common NameLR48_Vigan05g072200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 250aa    MW: 27880.6 Da    PI: 7.4469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0039ss01240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05111133123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ C k Fs++  L  H++ H
  Vang0039ss01240.1 111 FSCNFCQKEFSSSQALGGHQNAH 133
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-7108138No hitNo description
Gene3DG3DSA:3.30.160.602.4E-5109137IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MASSRDLEDY SSEASSTSQD IHKSNVEEGK KHEVTTMKEK GIKFEESKVS NSKTHMVLDF  60
VKFSNDQTLC GSKVELDFFN AKGSSSRANH TQGRDEHNKE EKPSSETNKT FSCNFCQKEF  120
SSSQALGGHQ NAHKQERALA KRRQGIDGGA FGNPHFLYYP YNPTHSFYGS YNRALGVRME  180
SMIHKPMAQR DHGNIRHSIP FLAESSANVT AKTNLTPLNH VEDNDNDRTK KEGTSNPSSS  240
DEIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0039ss01240.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423493.11e-176PREDICTED: zinc finger protein 3-like
TrEMBLA0A0L9UK341e-175A0A0L9UK34_PHAAN; Uncharacterized protein
STRINGXP_007148790.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-22C2H2 family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]