PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01850.1
Common NameLR48_Vigan08g138500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 169aa    MW: 19446.2 Da    PI: 9.4158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-06322120
                       EEETTTTEEESSHHHHHHHH CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                       + C++C+k+F+r  n++ H+
  Vang0032ss01850.1  3 FACSICSKTFNRYNNMQMHM 22
                       78*****************9 PP

2zf-C2H217.31.3e-0587109123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk+F  k + ++H +++
  Vang0032ss01850.1  87 FMCRKCGKTFAVKGDWRTHEKNC 109
                        89*****************9987 PP

3zf-C2H210.70.0016116133522
                        TTTEEESSHHHHHHHHHH CS
            zf-C2H2   5 dCgksFsrksnLkrHirt 22 
                         Cg  F++k +Lk Hir+
  Vang0032ss01850.1 116 TCGSDFKHKRSLKDHIRS 133
                        799*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.45330IPR007087Zinc finger, C2H2
SuperFamilySSF576673.18E-8325No hitNo description
SMARTSM003550.17325IPR015880Zinc finger, C2H2-like
PfamPF138940.0014325No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6322IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280525IPR007087Zinc finger, C2H2
SMARTSM003551905082IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.18E-882107No hitNo description
Gene3DG3DSA:3.30.160.603.8E-683107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003553587107IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.70487107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQFACSICSK TFNRYNNMQM HMWGHGSEFR KGPDSLKGTQ PAAMLRLPCY CCAQGCKNNI  60
NHPRAKPLKD FRTLQTHYKR KHGTKPFMCR KCGKTFAVKG DWRTHEKNCG KLWYCTCGSD  120
FKHKRSLKDH IRSFGKGHNP HPPFEAFEDE KECITGSDED ELNAHHHA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss01850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432562.11e-126PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-100ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0L9V6E61e-124A0A0L9V6E6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SC191e-124A0A0S3SC19_PHAAN; Uncharacterized protein
STRINGGLYMA12G09400.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-103WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]