PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 239aa    MW: 25711.1 Da    PI: 8.4443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01440.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024213235223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C++ F + + L++H +  H
  Vang0032ss01440.1 213 SCGSCKRNFANEDGLQQHKKAkH 235
                        7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.99212238IPR007087Zinc finger, C2H2
PROSITE patternPS000280214235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
LQMDSPMEFW GVEVKVGQNV KVDPMDPVSA YIHISQVALG EAKKEKANEP VVVYLKVGDQ  60
KIVLGTLKKD DIPHLSLDLV LDSDSELSHS SKSASVFFCG YKVLTDDGNI SDFSGEDQLY  120
LLDSEEEEEA LPLKGQDNGK PVTKAEGAKG KKRQNESASK TPISSKKAKT ATPEKTDGKK  180
SVHVATPYPM KKGGKTPKNV TKVQSPTSAG QLSCGSCKRN FANEDGLQQH KKAKHGGQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss01440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-158AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432197.14e-89PREDICTED: histone deacetylase HDT1-like
SwissprotQ8LJS24e-72HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A0L9V7E81e-87A0A0L9V7E8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SCD31e-87A0A0S3SCD3_PHAAN; Uncharacterized protein
STRINGXP_007132380.17e-78(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.16e-19histone deacetylase 2C