PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 172aa    MW: 18790.3 Da    PI: 7.6036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01150.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-055981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++Cg  Fs+   L  H+r+H
  Vang0032ss01150.1 59 HECSICGSEFSSGQALGGHMRRH 81
                       78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-65684No hitNo description
Gene3DG3DSA:3.30.160.606.9E-45781IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1595986IPR007087Zinc finger, C2H2
PfamPF139126.1E-125983IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEGASHKKPK LSPEEKKPPP SQSPHVAVTT YDRFEEDNVK NGPPISLQLG HGNNKGKIHE  60
CSICGSEFSS GQALGGHMRR HRSSTNTNTV DTSGSNTVIA VATTVSPPRN VLQLDLNLPA  120
PEDDIREAKF QFPVTTQMLV DPLPWFGVWL AFAKAKLLEV RMTVEQILTY C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss01150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432526.15e-97PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0L9V6T01e-95A0A0L9V6T0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SCI41e-95A0A0S3SCI4_PHAAN; Uncharacterized protein
STRINGXP_007132339.16e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-26C2H2 family protein