PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss04200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 466aa    MW: 52493.3 Da    PI: 9.4189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss04200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011413432323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C+ CgksF  ++ + +H++++
  Vang0022ss04200.1 413 CSQCGKSF-KPEKMYKHMKSC 432
                        ********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061369.0E-3367340IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
LHRQEGMTKG IKQNLCVMYS MAMESSKGYS HYTKEDLHIM KSKSKKNNTP REIEMEGKAL  60
GEVRRLHIVY FLSQIGGRAD HPHLIRVLHL TRNGVYLRDV KRWLGELRGK DLPEAFSWSY  120
KRRYKSGYVW QDLLDDDLIT PISDNEYILK GSQIHTTPFV WPPIISIHGH FQSILHFSNN  180
VKILIKLDNF LDNAAATTPS LEEKKAVGSS EISQDSLVFS SDRSSVTDDD SSKVEEEKHL  240
EITTGSEMHQ EKLETCSLPS LYHNLLSKKG THKDDQNKTH SPDSSLSTIS TSSSQSSFTK  300
IRSNSTKVSN IFRNWITCGT VETNDAALIM MNPAQTKISK EPSNIPETKA EICKGDRLGG  360
SERCFRTSWG HQDQKQQYGA RKSFDGEETN RSRKKLGDLL NQGSSKPFGG PICSQCGKSF  420
KPEKMYKHMK SCKGMKALGK SAPIVEEAQL PRSSNSSHTH YFLTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss04200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022637021.10.0uncharacterized protein LOC106760568 isoform X1
TrEMBLA0A0S3SJR10.0A0A0S3SJR1_PHAAN; Uncharacterized protein
STRINGGLYMA08G16910.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620