PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss02480.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family G2-like
Protein Properties Length: 314aa    MW: 34450.4 Da    PI: 7.2363
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss02480.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41.1e-303585151
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                       kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ
  Vang0022ss02480.2 35 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 85
                       79************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-293286IPR009057Homeodomain-like
PROSITE profilePS5129412.9943292IPR017930Myb domain
SuperFamilySSF466895.02E-143486IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-213586IPR006447Myb domain, plants
PfamPF002493.0E-73786IPR001005SANT/Myb domain
PfamPF143794.3E-1279111IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MERMFPPKKP STMNSHDRPM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVTQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQVQKHL QLRIEAQGKY MQSILEKAYQ TLAGENMASA  120
ASNLKGGIVP PQSIPDMGVL KEFESPLAFS SFQDLENIYG GDQIELQHNM EKPSLDHGFM  180
SMNENLCLGK KRSNPYSGSG KSPLIWSDDL RLQDLGGPAS SCLGPQDDPF KGDHIQITPP  240
GSLDRGSTDI DPMSDIYDSK PVLQCEAVVG EKKFDASMKL ERPSPRRAPL QAERMSPMIS  300
TGTMAQGRGS PFG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-173585151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-173585151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-173585151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-173585151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-173593260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss02480.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149173.10.0hypothetical protein PHAVU_005G047600g
SwissprotQ9SAK53e-74APL_ARATH; Myb family transcription factor APL
TrEMBLV7BT530.0V7BT53_PHAVU; Uncharacterized protein
STRINGGLYMA08G17400.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.21e-76G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]