PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss01500.1
Common NameLR48_Vigan05g007300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 757aa    MW: 81697.7 Da    PI: 5.716
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss01500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07302322526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ G C++Gd C +aHg
  Vang0022ss01500.1 302 PCPEFRK-GACRRGDMCEYAHG 322
                        8******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.8E-1730163IPR020683Ankyrin repeat-containing domain
CDDcd002046.97E-1536162No hitNo description
PfamPF127962.4E-1079151IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-1684163IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.46784192IPR020683Ankyrin repeat-containing domain
SMARTSM002480.009484114IPR002110Ankyrin repeat
PROSITE profilePS5008812.209119154IPR002110Ankyrin repeat
SMARTSM002481.9E-4119151IPR002110Ankyrin repeat
SMARTSM003569.5E-6297323IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-4302322IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981302324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4330360IPR000571Zinc finger, CCCH-type
SMARTSM0035647332355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MCRGPEKSES LSTPSSSAVE GSTRAEDMKD LTVCPEDSFS CLLELASNND FEDFKLALDS  60
DISLINEVGL WYVRQIGSKQ IVLEHRTPLM VAAMYGSVDV LKLILSCPEV DVNFSCGTDR  120
STALHCAASS GSLNAVDVVK LLLSSGADVR CVDGNGNRPV DVIVVPPKLK GLKASLEDLL  180
SDSGCDGSVG DCFIPLAVNS SCSDSATHFL SPENGLPSSP MASKFTDTTV NSASEKKEYP  240
TDPSLPDIKN SIYATDEFRM FSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPEFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GVSCNRRVCF FAHTAEELRP  360
LYVSTGSAVP SPRSSASTPN VMDMAAAMSL FPGSPSSLSG MSPSPFAQQM SPSGGILHSS  420
SAWPQPNVPA LHLPGSNIQT SRLRSSLNAR DMPPEDLDVL QDFDGQQHLL NDLSCFSQPR  480
PGAISVKRSG RSKTLTPSNL DDLFSAEISS PRYSDPAAAC VFSPTHKSAV FNQFQQLQSS  540
LSPINTSVSS PRNVEHTLLQ ASFGVSSPGR MSPRSLEPIS PMSARLSALA QRDKQQLRSL  600
SSRDLGAHNP VSIVGSPGNS WSNWGSPHGN GKVDWSINGN ELGRLQRSSS FELGNNGEEP  660
DLSWVQSLVK ESPSEIKEKL AGSGGPVVSA DGQNSNPQVE SIDHSVLGAW LEQMQLDQLD  720
MGQLQVDVKI ALIIVLMGTK EDMGSGPTHI RYSDTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss01500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425158.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
RefseqXP_017425159.10.0PREDICTED: zinc finger CCCH domain-containing protein 30-like isoform X1
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0L9UIU50.0A0A0L9UIU5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SKN70.0A0A0S3SKN7_PHAAN; Uncharacterized protein
STRINGGLYMA15G43030.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]