PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss01320.1
Common NameLR48_Vigan05g008900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 241aa    MW: 26820.6 Da    PI: 7.8528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss01320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-068299320
                       ETTTTEEESSHHHHHHHH CS
            zf-C2H2  3 CpdCgksFsrksnLkrHi 20
                       C+ C+ksF+r  nL+ H+
  Vang0022ss01320.1 82 CSVCSKSFNRYNNLQMHM 99
                       *****************9 PP

2zf-C2H215.93.7e-05164186123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        y C +C+k+F  k + ++H +++
  Vang0022ss01320.1 164 YMCRKCDKTFAVKGDWRTHEKNC 186
                        89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-673102No hitNo description
PROSITE profilePS5015710.69980107IPR007087Zinc finger, C2H2
SMARTSM003550.4480102IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.5E-58099IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6148184No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5160184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035533164184IPR015880Zinc finger, C2H2-like
SMARTSM00355200190213IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDETLLTEDG DDETVAVALH IGLPSVDSSD LLGSGKISAC AQMGEKGEVS VVSGHPLDRL  60
NKVQYWIPTP SQILIGPTQF LCSVCSKSFN RYNNLQMHMW GHGSQYRKGP DSLKGTQPSA  120
MLRLPCFCCA PGCKHNIDHP RARPLKDFRT LQTHYKRKHG IKPYMCRKCD KTFAVKGDWR  180
THEKNCGKIW YCLCGSDFKH KRSLKDHIKA FGHGHGAVDI DCMQEDEAAS EVEHDGDSSM  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss01320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424456.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0L9UHY00.0A0A0L9UHY0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SKM10.0A0A0S3SKM1_PHAAN; Uncharacterized protein
STRINGXP_007148861.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]