PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss01250.3
Common NameLR48_Vigan05g009400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 264aa    MW: 28793.5 Da    PI: 8.7623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss01250.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07424425
                       ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                       + C+f+ar G C  Gd+C F+H
  Vang0022ss01250.3  4 RVCKFYAR-GACLKGDQCDFIH 24
                       68******.************* PP

2zf-CCCH27.26.9e-093050526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C ++++ G C yG+rC++ H+
  Vang0022ss01250.3 30 ICTYYQK-GVCAYGSRCRYKHV 50
                       7******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.263124IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5428IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6622552IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-52549IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-42751IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-43049IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-63050IPR000571Zinc finger, CCCH-type
SMARTSM0035648121146IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.075126147IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.82E-13180258No hitNo description
Gene3DG3DSA:3.30.40.101.5E-10182253IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF000978.5E-7189251IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.811189252IPR001841Zinc finger, RING-type
SMARTSM001846.2E-6189251IPR001841Zinc finger, RING-type
PROSITE patternPS005180213222IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSNRVCKFYA RGACLKGDQC DFIHERKDGI CTYYQKGVCA YGSRCRYKHV KAYEATSSSS  60
NGRHPPVSDS VLNQTTKGAS SCVPKASKPS SSDKCARSSQ HKNLVSSGND VGQSSSSGAT  120
ASGLLFCSFA AANCPLGNKC SRVHGNRCFY CRKFCLHPTD SEERENHLAT CEKREKYLQA  180
LNDSQEVECN VCLERVLSKP KPSDCKFGLL PQCDHAFCLS CIRNWRNSAP TSGMDTSNNG  240
TANTVRKCPV CRKLSYFVIP SGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss01250.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411894.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_017425653.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotE0X9N49e-77C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0L9UHY50.0A0A0L9UHY5_PHAAN; Uncharacterized protein
STRINGGLYMA15G42820.11e-152(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.29e-72C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]