PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0022ss01250.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 268aa    MW: 29180.9 Da    PI: 8.7623
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0022ss01250.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07424425
                       ---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                       + C+f+ar G C  Gd+C F+H
  Vang0022ss01250.2  4 RVCKFYAR-GACLKGDQCDFIH 24
                       68******.************* PP

2zf-CCCH27.64.9e-093454526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C ++++ G C yG+rC++ H+
  Vang0022ss01250.2 34 ICTYYQK-GVCAYGSRCRYKHV 54
                       7******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.845127IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5428IPR000571Zinc finger, CCCH-type
PfamPF156636.6E-8558No hitNo description
PROSITE profilePS5010314.3612956IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-53453IPR000571Zinc finger, CCCH-type
SMARTSM0035648125150IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.075130151IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.82E-13184262No hitNo description
Gene3DG3DSA:3.30.40.101.5E-10186257IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM001846.2E-6193255IPR001841Zinc finger, RING-type
PfamPF000978.7E-7193255IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.811193256IPR001841Zinc finger, RING-type
PROSITE patternPS005180217226IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSNRVCKFYA RGACLKGDQC DFIHERKDGV SSNICTYYQK GVCAYGSRCR YKHVKAYEAT  60
SSSSNGRHPP VSDSVLNQTT KGASSCVPKA SKPSSSDKCA RSSQHKNLVS SGNDVGQSSS  120
SGATASGLLF CSFAAANCPL GNKCSRVHGN RCFYCRKFCL HPTDSEEREN HLATCEKREK  180
YLQALNDSQE VECNVCLERV LSKPKPSDCK FGLLPQCDHA FCLSCIRNWR NSAPTSGMDT  240
SNNGTANTVR KCPVCRKLSY FVIPSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0022ss01250.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411893.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_017425651.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotE0X9N44e-78C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0S3SKD10.0A0A0S3SKD1_PHAAN; Uncharacterized protein
STRINGGLYMA15G42820.11e-151(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-72C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]