PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 208aa    MW: 22452.7 Da    PI: 10.4127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05182204223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         C+ C+k+F++ s L++H +  H
  Vang0021ss02830.1 182 ICKSCSKTFNTESGLQQHSKAkH 204
                        6*****************98777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-5173203No hitNo description
PROSITE profilePS5015711.676181207IPR007087Zinc finger, C2H2
PROSITE patternPS000280183204IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKRRNKVDPT EFEACIHLSQ AALGEAKKDK TNEPVVVYLK VGEQKFVLGT LSREKIPQIS  60
LELVLEKEFE LSHNSDEDIP LLNAENGKPE KKVEELKALA SKKPDAKAGA VAKKVKADLG  120
KKRPNESASK TPVSSKKAKN ATPEKKDGKK NIRAETPQSV KKGGKTPSSE AKDKSPKSGG  180
LICKSCSKTF NTESGLQQHS KAKHGGQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-84AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230977.11e-97histone deacetylase HDT1
SwissprotQ8LJS21e-60HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A371I3J03e-93A0A371I3J0_MUCPR; Histone deacetylase HDT1 (Fragment)
STRINGXP_004487531.16e-74(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-16histone deacetylase 2C