PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss02520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 711aa    MW: 77444.2 Da    PI: 7.6254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss02520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.7e-07533555123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ Cgk F+r  nL+ H+r H
  Vang0021ss02520.1 533 HYCQVCGKGFKRDANLRMHMRAH 555
                        68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.7E-13120145IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.305121148IPR007087Zinc finger, C2H2
SMARTSM003550.052121143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-5531558No hitNo description
Gene3DG3DSA:3.30.160.601.1E-6533594IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653533560IPR007087Zinc finger, C2H2
SMARTSM003550.0034533555IPR015880Zinc finger, C2H2-like
PfamPF139120.0015533555IPR007087Zinc finger, C2H2
PROSITE patternPS000280535555IPR007087Zinc finger, C2H2
SMARTSM00355160590623IPR015880Zinc finger, C2H2-like
SMARTSM0035523628650IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MLSEISDMEG MAMEELVSCN NDPTNIAKGK RTKRRLRPLS PCVVTAVTAT AAAMTSSCSS  60
ASGGGGGSFS SITLEEEEED MANCLILLAQ GRGGSDPLHH KDLCDDVKTE KGGSKIEFYV  120
YECKTCNRTF PSFQALGGHR ASHKKPKVEE KKSPPPSLPP PPSSSSQLFN FEETKPNHMK  180
ISPSVSLQLG CGNNRGGLNF HGNKSKIHEC SISSECSTIG SQPAGAGGRS PGLEVSVFGE  240
SEFHDAVGCS GFGGMPLLEA RVGIGRRGGE NSAHTKVDAP KKDTGESETT KKRLIRSFQN  300
HQGLEMFPDH EDLVSPSVES GSVSHSSTLL FNLSILKDKV SEVQALVGVI LSPNETLPES  360
TSMAISSMNS TIQEILVTAS SMMFACQQMA LTTTPPGTNN NTTTCTHKLH QPNKLLPHSN  420
FGTNRSLLGN IAIDISDHHQ GCLFSSTESE ALDWFSESYN NNNDDNSNSN ISKTKEDDPG  480
VVIGENNMII TRGGAPREER ELNEEGYSHR GISPKNSDVI ELDAADLLAK YTHYCQVCGK  540
GFKRDANLRM HMRAHGDEYK TNAALSNPIK NKGKLEGESE LLMSVKPKRY SCPQEGCRWN  600
QKHAKFQPLK SMICAKNHYK RSHCPKMYVC KRCNQKQFSV LSDLRTHEKH CGDLKWQCSC  660
GTSFSRKDKL MGHVSLFLGH QPAINNVGLS SYSGKLEHHT LQMQIDATSR *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss02520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150139.10.0hypothetical protein PHAVU_005G130100g
TrEMBLA0A0L9UML20.0A0A0L9UML2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SGU70.0A0A0S3SGU7_PHAAN; Uncharacterized protein
STRINGXP_007150139.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-89C2H2 family protein