PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01970.1
Common NameLR48_Vigan05g180900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 420aa    MW: 47155.2 Da    PI: 8.3131
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-051234123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C+ C+k F r  nL+ H r H
  Vang0021ss01970.1 12 FICEVCNKGFQRDQNLQLHRRGH 34
                       89*******************88 PP

2zf-C2H212.10.0005888110123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H + +
  Vang0021ss01970.1  88 WKCEKCSKKYAVQSDWKAHNKIC 110
                        58*****************8876 PP

3zf-C2H211.20.0011118136523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg+ Fsrk+++++H   +
  Vang0021ss01970.1 118 DCGTIFSRKDSFVTHRAFC 136
                        9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-61134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.13E-71134No hitNo description
PROSITE profilePS5015710.8661234IPR007087Zinc finger, C2H2
SMARTSM003550.0261234IPR015880Zinc finger, C2H2-like
PfamPF121715.8E-51234IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM003551805383IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-476109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.13E-783108No hitNo description
SMARTSM0035516088108IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
LSPKSLMATN RFICEVCNKG FQRDQNLQLH RRGHNLPWKL RQRSKEEVRK KVYVCPEKSC  60
VHHDPCRALG DLTGIKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHNKIC GTRQYKCDCG  120
TIFSRKDSFV THRAFCDAMV EQSGRLPAIL SNLGNDILMN AQGPRLMPQG LQLHGFHSEF  180
GGPGSESYMG NFADAEHVEH KLRLPIWLDQ TNLQLNHPLG VVPGNSSVFS TGTTLPETNN  240
MFGISSSQAQ WTNYRYPEAS FRSASVSVPH GLKLEQEENK GELSHSVSSL YPSHMESIRM  300
GGNSPFDNSN FGLLDPNMSS TSTNNVVEIQ KIFKQGNEAE NFSLMVSSQA RSNMESGFSL  360
SCRKSLEHMV MPGIEEWESG EAEIMEKQVH SSSNTETKDF MGVGDGSVMN LQRQFLGHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3484152371Zinc finger protein JACKDAW
5b3h_F1e-3484152371Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13850KLRQRSKEEVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017425755.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
TrEMBLA0A0L9UNT90.0A0A0L9UNT9_PHAAN; Uncharacterized protein
STRINGXP_007150215.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-84indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]