PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss01470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 178aa    MW: 19843 Da    PI: 9.2916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss01470.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00054567123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC+ C+++Fs+   L  H  +H
  Vang0021ss01470.1 45 FKCKTCNRRFSSFQALGGHRASH 67
                       89**********99999998887 PP

2zf-C2H210.90.001596118123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+Cg  F     L  H+r+H
  Vang0021ss01470.1  96 HPCPICGLQFAIGQALGGHMRKH 118
                        78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.3674572IPR007087Zinc finger, C2H2
SuperFamilySSF576675.34E-745118No hitNo description
SMARTSM003550.0864567IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-124569IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM003550.2396118IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-896119IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKRDREEGEL DNMANCLMLL TKVGESEANA TSKGRDIRDG EIGDFKCKTC NRRFSSFQAL  60
GGHRASHKKP KLMITDLSCR HQLPCTPTTK QQPRMHPCPI CGLQFAIGQA LGGHMRKHRT  120
AINDGLLNNR RDSDSLSILK KSKNGGRLNL CLDLNLMPLE DDDLKLNLRT PVLNCFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss01470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424444.11e-127PREDICTED: zinc finger protein ZAT12
TrEMBLA0A0S3SGA11e-126A0A0S3SGA1_PHAAN; Uncharacterized protein
STRINGXP_007150296.11e-104(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.15e-29C2H2 family protein