PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0021ss00810.1
Common NameLR48_Vigan05g194400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 323aa    MW: 36480.9 Da    PI: 7.9189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0021ss00810.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05155174120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C k+F+r  n++ H+
  Vang0021ss00810.1 155 FSCPLCFKTFNRYNNMQMHM 174
                        89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.75E-5128177No hitNo description
PROSITE profilePS501579.66155182IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-5155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-5221259No hitNo description
Gene3DG3DSA:3.30.160.603.3E-4226259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTHPFCSNDF NAWFDLNSPF LFSSSSSPCS NPPFYFPSAF HHHQSSPPKE ALPFLNLSLA  60
RGEDLESSFS AMEVNREKER ESSISSNNNN SLDDETVTVA LHLGLPTTTA SADSTSNTYS  120
DREKAIACEY SPSRINKGQY WIPTPAQILI GPTQFSCPLC FKTFNRYNNM QMHMWGHGSQ  180
YRKGPESLRG TQPTAMLRLP CYCCAPECKN NIDHPRAKPL KDFRTLQTHY KRKHGIKPFM  240
CRKCCKAFAV RGDWRTHEKN CGKLWYCSCG SDFKHKRSLK DHIKAFGNGH KAYGIDCFDH  300
DDEAGSEIEQ ENVNEPLVSS HG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0021ss00810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017424436.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-125ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0L9UP650.0A0A0L9UP65_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SG710.0A0A0S3SG71_PHAAN; Uncharacterized protein
STRINGGLYMA15G03830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]