PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 1094aa    MW: 125878 Da    PI: 8.8431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02930.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.7e-12431181799
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +p  f+++ +++    +  +l  +sg  W+v++   kk++ ++l +GW +F  +n +   Df++F+++g ++f  +v++f k
  Vang0010ss02930.1  43 KVPEGFLKHLNED---FQNAVLIGPSGDNWQVTI--LKKGNNIYLYNGWPQFLTDNSVMLDDFLLFTYHGGNCF--HVQIFGK 118
                        6788888444433...3479**************..*********************************99***..***9987 PP

2B361.71.2e-19205298499
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +t+ +v  ++ l +  +fa++h   +e+ k+++l +++g+ Wev +++  +++++ + +t+GW +Fv++n+L  gD++vF+l++  + +l 
  Vang0010ss02930.1 205 LMTKCNVEDHCTLPIATEFARKHI--PETVKQIILWNTEGKFWEVVVTWfgCQNKRYTRFTTGWGRFVRDNRLMRGDTCVFELED--QNHLS 292
                        677889999**************4..334457*****************8877777799***********************965..66679 PP

                        EEEE-S CS
                 B3  94 vkvfrk 99 
                        v++fr+
  Vang0010ss02930.1 293 VHIFRT 298
                        **9996 PP

3B349.57.7e-16346432899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++v+  ++  +pk+f+++ +++  +s ++   ++sg +W+v +   kk++++++++GW +Fv +n +   D+++F+++g+++f  +v++f+k
  Vang0010ss02930.1 346 PSVFCDNLQKVPKEFLKKLNED-LSSNEVLSSSSSGDKWQVSV--LKKGNEVYMQNGWPKFVTDNSIVLHDVLLFTYHGENCF--HVQIFDK 432
                        5778888889******999655.5677999999**********..**********************************9***..*****98 PP

4B347.72.8e-156857601697
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         +lp +f++++gg+   s  +tl  ++g +W+v l  +k +++y++++GW+eF +   + +g  +vF+++g+s+f  +v+vf
  Vang0010ss02930.1 685 QRLPDDFMRKYGGE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGF--NVHVF 760
                        479********887..7779***************..**********************************9999..77777 PP

5B353.25.6e-179641054498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3    4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92  
                         vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr ++    l++GW eF  +n+L egD++vF+l + +e  l
  Vang0010ss02930.1  964 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRVGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 1048
                         78899******************877743...59**************777776..55***********************998888889 PP

                         EEEEE- CS
                 B3   93 vvkvfr 98  
                          v++fr
  Vang0010ss02930.1 1049 QVTIFR 1054
                         999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-1727119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.54727119IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-1628120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-1030116No hitNo description
SMARTSM010198.2E-1132119IPR003340B3 DNA binding domain
PfamPF023624.4E-943118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-23194298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-23197301IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.6E-9202299IPR003340B3 DNA binding domain
PROSITE profilePS5086314.381202299IPR003340B3 DNA binding domain
PfamPF023623.0E-16205298IPR003340B3 DNA binding domain
CDDcd100176.01E-18206297No hitNo description
Gene3DG3DSA:2.40.330.108.1E-19315434IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929339433IPR003340B3 DNA binding domain
SMARTSM010191.4E-8342433IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-17347434IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-13349433IPR003340B3 DNA binding domain
CDDcd100178.60E-9356431No hitNo description
Gene3DG3DSA:2.40.330.101.4E-10524602IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-11525601IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.854532626IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111670763IPR003340B3 DNA binding domain
SMARTSM010193.0E-11676763IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-19677761IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19681761IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-12686760IPR003340B3 DNA binding domain
CDDcd100171.06E-14686761No hitNo description
Gene3DG3DSA:2.40.330.103.5E-239531054IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-229541055IPR015300DNA-binding pseudobarrel domain
CDDcd100175.94E-209591054No hitNo description
PROSITE profilePS5086313.6069611056IPR003340B3 DNA binding domain
SMARTSM010192.3E-149611056IPR003340B3 DNA binding domain
PfamPF023625.6E-159641054IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MRDFSFYQKA LIVQGNGREM WQMDYYRGNP VFFVIINNSK LQKVPEGFLK HLNEDFQNAV  60
LIGPSGDNWQ VTILKKGNNI YLYNGWPQFL TDNSVMLDDF LLFTYHGGNC FHVQIFGKNG  120
LERLCFKQTR QDQVLIPSLV RTKKNTHRRT SSSPFLHQAK SYKKGLSFSS KFSFSKLKSS  180
VKIESSEACY LADSFTSRNP HWKHLMTKCN VEDHCTLPIA TEFARKHIPE TVKQIILWNT  240
EGKFWEVVVT WFGCQNKRYT RFTTGWGRFV RDNRLMRGDT CVFELEDQNH LSVHIFRTGF  300
CAPKFLMAGG VKKYPLFFTI FVPEQHSQTM CCYHSLFMVI WFQHYPSVFC DNLQKVPKEF  360
LKKLNEDLSS NEVLSSSSSG DKWQVSVLKK GNEVYMQNGW PKFVTDNSIV LHDVLLFTYH  420
GENCFHVQIF DKNGVERLCL KETTQEKKDM PCRNKGFIFT GSETMKTGQK QTATPSLART  480
KKKKERHFSP GKSHQEDLSL PKDFPAPQHS VEIESSEALK LAESFTSSKP YWKHLMTKCH  540
VEGRCILPIA TKFARKYIPE EVKQIHIGNS EGTLWKVHVS WSKGYAHFST GWANLVRDNK  600
LMRAEESGDW RIGSDGEVDL KDNDAPFFPQ ASSTLHSPNQ TTEDWLSGCE EKSENFFWDK  660
FRTSLRSCLT KNYQYLESNL IYELQRLPDD FMRKYGGELS PIVTLSVPDG SVWRVGLKKA  720
DNKYWFRDGW QEFIQHYSIG VGYLLVFRYE GKSGFNVHVF NLATSEINYQ SAIRCSNEGP  780
HFANLLKFFE EIDDEDSIEI LDSSPSHLAP SSLQNRVLAC SVDKMSPAKS YTPPALQNLF  840
NGSKLNSINW GEGGDAHCSK SANSLDDRFT RDIGVQFNAV EFKRSTEELK LRASMEERMK  900
KTARKKRKSD GQEASAEQEE EVEMRFRFYE SASARKRTVT AEERERAISA AKAFEPANPF  960
CRVVLRPSYL YRGCIMYLPS CFAEKHLNGV SGFIKLQISN GRQWPVRCLY RVGRAKLSQG  1020
WFEFSLENNL GEGDVCVFEL LRMKEVVLQV TIFRITEEVG MLKPPPSQQN QNMSSAKLLS  1080
TPLQQHLSST QMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-67927105915146B3 domain-containing transcription factor VRN1
4i1k_B2e-67927105915146B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1478484RTKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss02930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D6LII40.0A0A4D6LII4_VIGUN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-106B3 family protein