PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss02100.1
Common NameLR48_Vigan08g153900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 537aa    MW: 59545.6 Da    PI: 8.6503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss02100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236686323
                       ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                       C++C+k F r  nL+ H r H
  Vang0010ss02100.1 66 CEICSKGFQRDQNLQLHRRGH 86
                       *******************88 PP

2zf-C2H211.80.00077141163123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k +  +s+ k H + +
  Vang0010ss02100.1 141 WKCEKCSKKYAVQSDWKAHSKIC 163
                        58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.31E-76386No hitNo description
Gene3DG3DSA:3.30.160.609.1E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7626486IPR007087Zinc finger, C2H2
SMARTSM003550.236486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM0035578106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.8E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.31E-7136161No hitNo description
SMARTSM00355140141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MMSEESFSVP PNTVRDSLVH VQPPSSNPNN NNPNPSSNPA KRRRNPDAEV VALSPKSLMA  60
TNRFLCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRANKDQ VRKKVYVCPE KSCVHHDPSR  120
ALGDLTGIKK HYSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESVRIT TVPAALSNLR NDHHLTNAQA SRIPQIFSGF HSDQFGGSGT  240
SESLVNYAEA NHHHHQQQQQ LQQKLRLPLW LDHQANSQVL HHPLINFPTK PSDFSSSGLN  300
PVPDVVQTMD MFGPQFVNYR YPEASFGGAN LSVLPPHGLK QEQEENKGEL SHSASSNLYL  360
SSNQNPPHYM SATTVLQKTV QMGSTRVNDN AFCSTGRNRN GNHNNVVNNV VVEVQKLDDL  420
VSVEGCTNLG GGGGGYLLNG DSNNSFVVVN GTKGLEHMVM PVDEETTAAS IMGKQLHSIS  480
SHSKNQLGLT RDFLGVGDNN IESIRRPFFE QDLVEFNAMG SGSGMNLQSQ YGGHYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36137202368Zinc finger protein JACKDAW
5b3h_F2e-36137202368Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
190103KLKQRANKDQVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss02100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433758.10.0PREDICTED: protein indeterminate-domain 9-like
TrEMBLA0A0L9V7070.0A0A0L9V707_PHAAN; Uncharacterized protein
STRINGXP_007132196.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.14e-95C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]