PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0010ss01050.1
Common NameLR48_Vigan08g161700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 239aa    MW: 26703.1 Da    PI: 8.5392
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0010ss01050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-057897120
                       EEETTTTEEESSHHHHHHHH CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                       + Cp C k+F+r  n++ H+
  Vang0010ss01050.1 78 FACPLCFKTFNRYNNMQMHM 97
                       78*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.29E-574100No hitNo description
PROSITE profilePS501579.61978105IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.1E-67897IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-5144182No hitNo description
Gene3DG3DSA:3.30.160.603.6E-4148182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
TSSSSKCLDE EDAVTVALHL GLPSTAASAD LASSLYSAEV SDKGEKTTDA SGLLTDRINR  60
GQYWIPTSAQ ILIGPTQFAC PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTAML  120
RLPCYCCAPG CKNNIDHPRA KPLKDFRTLQ THYKRKHGTK PFVCRKCCKT FAVRGDWRTH  180
EKNCGKRWYC SCGSDFKHKR SLKDHIKAFG YGHTAHGNDC MNLDQDDDQA GSEIEQEN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0010ss01050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432068.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-116ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0L9V6U51e-180A0A0L9V6U5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SD461e-180A0A0S3SD46_PHAAN; Uncharacterized protein
STRINGXP_007132003.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]